Phylogeographic analysis pipeline for Rumex hastatus using ANGSD and SDM
The repository provides a complete set of shell and R scripts to process raw sequencing reads, call SNPs with ANGSD, extract non‑coding variants, compute population genetics statistics, and build ensemble species distribution models with biomod2. It is aimed at researchers conducting phylogeographic or landscape genetics studies who need a reproducible workflow spanning genomics to ecological niche modeling. By chaining widely used tools in a single pipeline, it saves time and ensures consistency across steps, offering a ready‑made solution for similar plant‑focused projects.
View on GitHub →bikgya/Rumex_phylogeography_HHM